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astex.cmds.txt
/public/52210/jsmol/data/astex.cmds.txt
/public/52210/jsmol/data/
D:\share6\www\public\52210\jsmol\data\astex.cmds.txt
txt
astex.cmds
General Astex Commands
selection_command ::=
| SELECT selection:selectedAtoms
| APPEND selection:selectedAtoms
| EXCLUDE selection:selectedAtoms
| INVERT selection:selectedAtoms
| DEFINE STRING:name selection:selectedAtoms
| UNDEFINE STRING:name
| EVALUATE selection:selectedAtoms
molecule_command ::=
WRITE arguments:args
molecule_command ::=
MOLECULE LAZY STRING:name STRING:file
| MOLECULE LOAD STRING:name STRING:file
| MOLECULE LOAD STRING:file
| MOLECULE DISPLAY STRING:pattern on_off:action
| MOLECULE STRING:pattern STRING:name on_off:value
| MOLECULE DISPLAY STRING:pattern STRING:action
| MOLECULE REMOVE STRING:pattern
| MOLECULE RELOAD STRING:name STRING:file
remove_command ::=
REMOVE MOLECULE STRING:pattern
| REMOVE OBJECT STRING:pattern
map_command ::=
MAP LOAD STRING:name STRING:file
| MAP LOAD STRING:name STRING:file INTEGER:dataMode
| MAP LOAD STRING:name STRING:file INTEGER:dataMode STRING:level
| MAP LOAD STRING:name STRING:file INTEGER:dataMode number:level
| MAP LOAD STRING:name STRING:file INTEGER:dataMode STRING:level STRING:doSurf
| MAP LOAD STRING:name STRING:file INTEGER:dataMode number:level STRING:doSurf
| MAP REMOVE STRING:name
| MAP REPLACE STRING:name STRING:file
| MAP REPLACE STRING:name STRING:file INTEGER:dataMode
| MAP REPLACE STRING:name STRING:file INTEGER:dataMode STRING:level
| MAP REPLACE STRING:name STRING:file INTEGER:dataMode number:level
| MAP WRITE STRING:name STRING:fileName
| MAP WRITE STRING:name STRING:fileName INTEGER:mode
| MAP STRING:name CONTOUR INTEGER:contour number:value
| MAP STRING:name CONTOUR INTEGER:contour STRING:onoff
| MAP STRING:name CONTOUR INTEGER:contour COLOR STRING:c
| MAP STRING:name CONTOUR INTEGER:contour SOLID on_off:value
| MAP STRING:name CONTOUR INTEGER:contour LINEWIDTH number:w
| MAP STRING:name CONTOUR INTEGER:contour TRANSPARENCY INTEGER:t
| MAP STRING:name CLIP selection:selectedAtoms
| MAP STRING:name CONTOUR INTEGER:contour on_off:onoff
| MAP EXCLUDE STRING:parentMap STRING:newMap STRING:subMaps
| MAP SEGMENT STRING:mapName STRING:segFile number:level
| MAP DEFINE MOLECULE STRING:molName STRING:directory
| MAP DEFINE STRING:mapName
| MAP DEFINE STRING:mapName number:tolerance
| MAP DEFINE ALL MOLECULE STRING:mapName STRING:molName STRING:directory
| MAP STRING:mapName MOLECULE STRING:modelName STRING:level
| MAP STRING:mapName MOLECULE STRING:modelName number:level
| MAP STRING:mapName MOLECULE STRING:modelName ALL INTEGER:intervals
| MAP STRING:mapName GRAPH INTEGER:intervals STRING:findMax
| MAP STRING:mapName GRAPH INTEGER:intervals
| MAP STRING:mapName STRING:level GRAPH
| MAP STRING:mapName number:level GRAPH
| MAP STRING:mapName VOLUME INTEGER:intervals STRING:doNeighbour
| MAP STRING:mapName VOLUME STRING:level
| MAP STRING:mapName VOLUME number:level
| MAP STRING:mapName VOLUME VOLUME
| MAP STRING:mapName STRING:vol VOLUME
| MAP STRING:mapName number:vol VOLUME
| MAP STRING:mapName PRINT
| MAP STRING:mapName MATRIX
number:x00 number:x01 number:x02 number:x03
number:x10 number:x11 number:x12 number:x13
number:x20 number:x21 number:x22 number:x23
| MAP STRING:name arguments:args
mask_command ::=
MASK LOAD STRING:mapName STRING:file
| MASK WRITE STRING:mapName STRING:maskName STRING:file
| MASK WRITE ALL STRING:mapName
| MASK WRITE ALL STRING:mapName STRING:directory
| MASK DEFINE ALL STRING:mapName STRING:molName
| MASK DEFINE SELECT STRING:mapName STRING:label STRING:color number:tolerance
| MASK DEFINE STRING:mapName STRING:label STRING:color number:threshold
| MASK DEFINE STRING:mapName STRING:label STRING:color STRING:threshold
| MASK INCREASE STRING:mapName STRING:maskName
| MASK INCREASE STRING:mapName STRING:maskName INTEGER:times
| MASK DECREASE STRING:mapName STRING:maskName
| MASK REMOVE ALL STRING:mapName
| MASK REMOVE STRING:mapName STRING:maskName
| MASK COLOR STRING:mapName STRING:maskName STRING:color
| MASK NAME STRING:mapName STRING:maskName STRING:newName
| MASK RADIUS STRING:mapName STRING:maskName number:tolerance
| MASK AND STRING:mapName STRING:mask1 STRING:mask2 STRING:mask3
| MASK OR STRING:mapName STRING:mask1 STRING:mask2 STRING:mask3
| MASK XOR STRING:mapName STRING:mask1 STRING:mask2 STRING:mask3
| MASK EXCLUDE STRING:mapName STRING:mask1 STRING:mask2 STRING:mask3
display_command ::=
DISPLAY selection:selectedAtoms
| DISPLAY render_style:mode selection:selectedAtoms
| DISPLAY render_style:mode on_off:onoff selection:selectedAtoms
| DISPLAY WIDE selection:selectedAtoms
| CLIP number:c
| CLIP number:c number:d
| CLIP INCREASE number:c
| CLIP DECREASE number:c
| DOTSURFACE STRING:name INTEGER:n selection:selectedAtoms
| VDW number:r selection:selectedAtoms
| BALL_RADIUS number:r selection:selectedAtoms
| STICK_RADIUS number:r selection:selectedAtoms
| CYLINDER_RADIUS number:r selection:selectedAtoms
| BOND_WIDTH INTEGER:iw selection:selectedAtoms
| STICK_COLOR STRING:colour selection:selectedAtoms
| CHARGE number:r selection:selectedAtoms
| ATTRIBUTE:att STRING:transformSelectionType selection:selectedAtoms
| ATTRIBUTE:att number:ux number:uy number:uz number:px number:py number:pz number:theta selection:selectedAtoms
| ATTRIBUTE:att number:a11 number:a12 number:a13 number:a21 number:a22 number:a23 number:a31 number:a32 number:a33 selection:selectedAtoms
| ATTRIBUTE:att number:rx number:ry number:rz selection:selectedAtoms
| ATTRIBUTE:att number:r selection:selectedAtoms
| SURFACE arguments:args STRING:name STRING:colour selection:selectedAtoms
surface_command ::=
ANASURFACE arguments:args STRING:name STRING:colour selection:selectedAtoms
color_command ::=
| COLOR_BY_RAINBOW selection:selectedAtoms
| COLOR STRING:c selection:selectedAtoms
| TRANSPARENCY INTEGER:n selection:selectedAtoms
label_command ::=
LABEL CLEAR selection:selectedAtoms
| LABEL STRING:format selection:selectedAtoms
center_command ::=
CENTER selection:selectedAtoms
| RADIUS number:x
| CENTER number:x number:y number:z
| CENTER MAP STRING:map_name
| RADIUS MAP STRING:map_name number:zoom
| RADIUS MAP STRING:map_name number:zoom STRING:level STRING:axis
| RADIUS MAP STRING:map_name number:zoom number:level STRING:axis
distance_command ::=
DISTANCE selection:first TO selection:second
| DISTANCE arguments:args
| DISTANCE STRING:state
pdbe_command ::=
PDBE arguments:args selection:selectedAtoms
| PDBE arguments:args
view_command ::=
VIEW arguments:args
miscellaneous_command ::=
SET STRING:name on_off:value
| EDIT STRING:name STRING:value selection:selectedAtoms
| DELETE selection:selectedAtoms
| SET STRING:name STRING:value
| SET STRING:name INTEGER:value
| FETCH STRING:urlName
number:x00 number:x01 number:x02 number:x03
number:x10 number:x11 number:x12 number:x13
number:x20 number:x21 number:x22 number:x23
number:x30 number:x31 number:x32 number:x33
| BACKGROUND TRANSPARENCY INTEGER:t
| BACKGROUND STRING:colorName
| PRINT STRING:output
| RUN STRING:script
| SLIDE arguments:args
| STRING:s arguments:args
| UPDATE arguments:args number_list:nl
| WRITE VIEW CURRENT STRING:fileName
| WRITE VIEW ALL STRING:fileName
animation_command ::=
ANIMATE arguments:args
modelling_command ::=
MODELLING arguments:args
| FORCEFIELD arguments:args
light_command ::= LIGHT INTEGER:n arguments:args
hbond_command ::= HBOND arguments:args
active_site_command ::= ACTIVE_SITE arguments:args
skeleton_command ::= SKELETON arguments:args
schematic_command ::=
SECSTRUC arguments:args selection:selectedAtoms
| SCHEMATIC arguments:args selection:selectedAtoms
load_command ::=
LOAD MOLECULE STRING:name STRING:file
| LOAD MOLECULE STRING:file
object_command ::=
OBJECT REMOVE STRING:pattern
| OBJECT LOAD STRING:name STRING:filename
| OBJECT DISPLAY STRING:pattern on_off:state
| OBJECT STRING:pattern DISPLAY on_off:state
| OBJECT STRING:name BACKFACE on_off:state
| OBJECT STRING:name TEXTURE STRING:texture
| OBJECT STRING:name TEXTURE STRING:range number:value number:value2
| OBJECT STRING:name TEXTURE STRING:attribute number:value
| OBJECT STRING:name TEXTURE DISTANCE
STRING:uvspec selection:selectedAtoms
| OBJECT STRING:name TEXTURE CURVATURE
STRING:uvspec number:dmax selection:selectedAtoms
| OBJECT STRING:name TEXTURE ELECTROSTATIC
STRING:uvspec number:dmax selection:selectedAtoms
| OBJECT STRING:name TEXTURE LIPOPHILICITY
STRING:uvspec number:dmax selection:selectedAtoms
| OBJECT STRING:name COLOR STRING:colorName
| OBJECT STRING:name LINEWIDTH number:w
| OBJECT STRING:name TRANSPARENCY INTEGER:t
| OBJECT STRING:name CLIP STRING:uvSpec
| OBJECT STRING:name COPYTO STRING:newname
| OBJECT STRING:name TEXTURE RECTANGULAR
| OBJECT STRING:name arguments:args
| OBJECT WRITE STRING:name STRING:fileName
| OBJECT WRITE MAP STRING:mapName STRING:fileName
texture_command ::=
TEXTURE LOAD STRING:name STRING:image
| TEXTURE STRING:name SIMPLE
| TEXTURE STRING:name LIPOPHILICITY
| TEXTURE arguments:args
| TEXTURE REMOVE STRING:name
render_style ::=
on_off ::=
arguments ::=
arg_list ::=
arg:a
| arg_list:h arg:a
arg ::=
ARG:a STRING:value
| ARG:a INTEGER:i
| ARG:a DOUBLE:d
| ARG:a LCURLY selection:selectedAtoms RCURLY
| ARG:a TRUE
| ARG:a FALSE
selection ::=
selection_expression:mask
selection_expression ::=
statement:mask
| LPAREN selection_expression:mask RPAREN
| selection_expression:mask1 AND selection_expression:mask2
| selection_expression:mask1 OR selection_expression:mask2
| NOT selection_expression:mask
| BYRESIDUE selection_expression:mask
| BONDED selection_expression:mask
| SPHERE number:r AROUND selection_expression:mask
| CONTACT number:r selection_expression:mask
| GRAPH selection_expression:mask
| SPHERE number:r AROUND number:x number:y number:z
statement ::=
ID id_list:v
| ATOM string_list:v
| ELEMENT id_list:v
| RESIDUE id_list:v
| MODULO INTEGER:n
| SEQUENTIAL id_list:v
| INSERTION STRING:s
| ALTCODE STRING:s
| NAME string_list:v
| CHAIN string_list:v
| MOLECULE string_list:v
| MOLEXACT string_list:v
| ATTRIBUTE:a OPERATOR:o number:d
| ID OPERATOR:o number:d
| string_list:composites
| COMPOSITE string_list:v
| GROUP STRING:definition
| PEEK INTEGER:i
string_list ::=
STRING:s
| string_list:v STRING:s
number ::=
INTEGER:i
| DOUBLE:d
id_list ::=
id:i
| id_list:v id:i
number_list ::=
number:f
| number_list:fa number:f
id ::=
Type Ver.1.05
[utf-8] [shift_jis]
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